The hydrophobic mismatch determines the miscibility of ceramides in lipid monolayers

The organization of lipids within membranes strongly depends on the interaction with other lipid and protein molecules. Sphingolipids comprise a structurally diverse family, the ceramides being some of the simplest members. Although small chemical modifications of ceramide structure, such as varying the N-acyl chain length, lead to a complex polymorphism of this lipid, only long acyl chain ceramides have usually been studied and their properties became a putative hallmark for all ceramides. In this work, we studied the mixing behavior of C10:0 Cer, which has the N-acyl chain shorter than that of the sphingosine acyl chain and displays an expanded to condensed phase transition at 25 mN m-1 at 24 °C, with ceramides N-acylated with longer fatty acyl chains C12:0, C14:0 and C18:0. The N-acyl chain length determined the miscibility of ceramides in Langmuir monolayers, as it was ascertained by the dependence of the mean molecular area, perpendicular dipole moment, surface topography and film thickness with the mixture composition. We found that, as the hydrophobic mismatch in ceramides increased complete miscibility, partial or complete immiscibility can occur. © 2012 Elsevier Ireland Ltd.Fil: Dupuy, Fernando Gabriel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet Noa Sur. Instituto Superior de Investigaciones Biológicas. Grupo de Investigación y Desarrollo del Noroeste Argentino | Universidad Nacional de Tucumán. Instituto Superior de Investigaciones Biológicas. Grupo de Investigación y Desarrollo del Noroeste Argentino; ArgentinaFil: Maggio, Bruno. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Centro de Investigaciones en Química Biológica de Córdoba. Universidad Nacional de Córdoba. Facultad de Ciencias Químicas. Centro de Investigaciones en Química Biológica de Córdoba; Argentin

Parallel extraction and simplification of large isosurfaces using an extended tandem algorithm

International audienceIn order to deal with the common trend in size increase of volumetric datasets, in the past few years research in isosurface extraction has focused on related aspects such as surface simplification and load-balanced parallel algorithms. We present a parallel, block-wise extension of the tandem algorithm by Attali et al., which simplifies on the fly an isosurface being extracted. Our approach minimizes the overall memory consumption using an adequate block splitting and merging strategy along with the introduction of a component dumping mechanism that drastically reduces the amount of memory needed for particular datasets such as those encountered in geophysics. As soon as detected, surface components are migrated to the disk along with a meta-data index (oriented bounding box, volume, etc.) that permits further improved exploration scenarios (small component removal or particularly oriented component selection for instance). For ease of implementation, we carefully describe a master and worker algorithm architecture that clearly separates the four required basic tasks. We show several results of our parallel algorithm applied on a geophysical dataset of size 7000 × 1600 × 2000

Isosurface extraction and interpretation on very large datasets in geophysics

International audienceIn order to deal with the heavy trend in size increase of volumetric datasets, research in isosurface extraction has focused in the past few years on related aspects such as surface simplification and load balanced parallel algorithms. We present in this paper a parallel, bloc-wise extension of the tandem algorithm [Attali et al. 2005], which simplifies on the fly an isosurface being extracted. Our approach minimizes the overall memory consumption using an adequate bloc splitting and merging strategy and with the introduction of a component dumping mechanism that drastically reduces the amount of memory needed for particular datasets such as those encountered in geophysics. As soon as detected, surface components are migrated to the disk along with a meta-data index (oriented bounding box, volume, etc) that will allow further improved exploration scenarios (small components removal or particularly oriented components selection for instance). For ease of implementation, we carefully describe a master and slave algorithm architecture that clearly separates the four required basic tasks. We show several results of our parallel algorithm applied on a 7000×1600×2000 geophysics dataset

Poly(fluoroacrylate)s with tunable surface hydrophobicity via radical copolymerization of 2,2,2-trifluoroethyl α-fluoroacrylate and 2-(trifluoromethyl)acrylic acid

International audienceThe synthesis of poly(fluoroacrylate)s with tunable wettability and improved adhesion for potential applicationas functional coatings was achieved via radical copolymerization of 2,2,2-trifluoroethylα-fluoroacrylate (FATRIFE) with 2-(trifluoromethyl)acrylic acid (MAF), an adhesion-promoting monomer.These copolymerizations, initiated by tert-butyl peroxypivalate at varying comonomer feed ([FATRIFE]0/[MAF]0) ratios led to a series of poly(FATRIFE-co-MAF) copolymers with different molar compositions infair to good conversions (32–87%) depending on the MAF feed content. The microstructures of the synthesizedpoly(FATRIFE-co-MAF) copolymers were determined by 19F NMR spectroscopy. Even at MAFfeed contents higher than 50%, MAF incorporation into the copolymers was lower than 50%, since MAFdoes not undergo any homopolymerization under radical polymerization conditions. The reactivity ratiosof the (FATRIFE; MAF) monomer pair were also determined (rFATRIFE = 1.65 ± 0.07 and rMAF = 0 at 56 °C)evidencing the formation of statistical copolymers. Initiation involving a highly branched perfluorinatedradical that released a •CF3 radical enabled the demonstration of the regioselective attack of the latterradical onto the CH2 of FATRIFE. The resulting poly(FATRIFE-co-MAF) copolymers exhibited various glasstransition temperatures (Tgs) depending on their compositions. Tg values increased with increasing MAFcontents in the copolymer. In addition, their thermal stability (the temperature for 10% weight loss in air,Td10%) increased with increasing FATRIFE content in the copolymer and reached 348 °C (for that containing93 mol% FATRIFE). Finally, a high copolymer MAF content led to both a good adhesion onto metalsubstrates and to improved hydrophilicity, as revealed by the decrease of the water contact angle from107° (for a reference PFATRIFE homopolymer) to 81° (for a copolymer containing 42 mol% MAF)

Global regulation of gene expression in response to cysteine availability in Clostridium perfringens

<p>Abstract</p> <p>Background</p> <p>Cysteine has a crucial role in cellular physiology and its synthesis is tightly controlled due to its reactivity. However, little is known about the sulfur metabolism and its regulation in clostridia compared with other firmicutes. In <it>Clostridium perfringens</it>, the two-component system, VirR/VirS, controls the expression of the <it>ubiG </it>operon involved in methionine to cysteine conversion in addition to the expression of several toxin genes. The existence of links between the <it>C. perfringens </it>virulence regulon and sulfur metabolism prompted us to analyze this metabolism in more detail.</p> <p>Results</p> <p>We first performed a tentative reconstruction of sulfur metabolism in <it>C. perfringens </it>and correlated these data with the growth of strain 13 in the presence of various sulfur sources. Surprisingly, <it>C. perfringens </it>can convert cysteine to methionine by an atypical still uncharacterized pathway. We further compared the expression profiles of strain 13 after growth in the presence of cystine or homocysteine that corresponds to conditions of cysteine depletion. Among the 177 genes differentially expressed, we found genes involved in sulfur metabolism and controlled by premature termination of transcription via a cysteine specific T-box system (<it>cysK</it>-<it>cysE</it>, <it>cysP1 </it>and <it>cysP2</it>) or an S-box riboswitch (<it>metK </it>and <it>metT</it>). We also showed that the <it>ubiG </it>operon was submitted to a triple regulation by cysteine availability via a T-box system, by the VirR/VirS system via the VR-RNA and by the VirX regulatory RNA.</p> <p>In addition, we found that expression of <it>pfoA </it>(theta-toxin), <it>nagL </it>(one of the five genes encoding hyaluronidases) and genes involved in the maintenance of cell redox status was differentially expressed in response to cysteine availability. Finally, we showed that the expression of genes involved in [Fe-S] clusters biogenesis and of the <it>ldh </it>gene encoding the lactate dehydrogenase was induced during cysteine limitation.</p> <p>Conclusion</p> <p>Several key functions for the cellular physiology of this anaerobic bacterium were controlled in response to cysteine availability. While most of the genes involved in sulfur metabolism are regulated by premature termination of transcription, other still uncharacterized mechanisms of regulation participated in the induction of gene expression during cysteine starvation.</p

Micromechanics of root development in soil

International audienc

Preparation and medical follow-up for a single-handed transatlantic rowing race

Background: A single-handed transatlantic rowing race was organised between Senegal and French Guyana (2600 nautical miles). During the race, rowers adjust their lifestyle to maintain an optimal level of performance. Nutrition, circadian rhythm disturbance, psychological state, pain and other medical problems impact on physical abilities and increase the occurrence of accidents. We surveyed the prevalence of medical complications during this race and the preparation that we could suggest for this kind of activity. Materials and methods: This is a descriptive, retrospective case series study. Follow-up consisted of sending out a questionnaire and performing individual interviews. Results: A total of 23 participants including 1 woman and 22 men; mean age of 46.5 years (range: 35–59) entered the race. The race lasted for 39 to 52 days with participants rowing between 10 and 12 h/day. Nine participants dropped out. Energy intake was 4500 to 6000 kcal/day and fluid intake was 4 to 5.5 L/day. Mean weight loss was 13.3 kg. The resting period was 6 ± 1 h/24 h divided into 1.5 to 2 h periods essentially during darkness. A total of 92% of the racers required medical care for dermatological problems; other conditions requiring medical care were: tendinitis in 10 cases, diarrhoea in 4, moderate to severe seasickness in 4, hallucinations in 3, panic attacks in 2, burns in 2, and disembarkation syndrome (“land sickness”) lasting from 45 min to 6 h in 13. Conclusions: Physiological and psychological impact of this type of event is still unclear. The most common medical problems are dermatological, rheumatological complications and minor trauma. Medical and psychological preparation should be offered to candidates for these competitions.

Atypical surface behavior of ceramides with nonhydroxy and 2-hydroxy very long-chain (C28-C32) PUFAs

Unique species of ceramide (Cer) with very-long-chain polyunsaturated fatty acid (VLCPUFA), mainly 28?32 carbon atoms, 4?5 double bonds, in nonhydroxy and 2-hydroxy forms (n-V Cer and h-V Cer, respectively), are generated in rat spermatozoa from the corresponding sphingomyelins during the acrosomal reaction. The aim of this study was to determine the properties of these sperm-distinctive ceramides in Langmuir monolayers. Individual Cer species were isolated by HPLC and subjected to analysis of surface pressure, surface potential, and Brewster angle microscopy (BAM) as a function of molecular packing. In comparison with known species of Cer, n-V Cer and h-V Cer species showed much larger mean molecular areas and increased molecular dipole moments in liquid expanded phases, which suggest bending and partial hydration of the double bonded portion of the VLCPUFA. The presence of the 2-hydoxyl group induced a closer molecular packing in h-V Cer than in their chain-matched n-V Cer. In addition, all these Cer species showed liquid-expanded to liquid-condensed transitions at room temperature. Existence of domain segregation was confirmed by BAM. Additionally, thermodynamic analysis suggests a phase transition close to the physiological temperature for VLCPUFA-Cers if organized as bulk dispersions.Fil: Peñalva, Daniel Alejandro. Consejo Nacional de Investigaciones Cientificas y Técnicas. Centro Científico Tecnológico Bahia Blanca. Instituto de Investigaciones Bioquímicas Bahia Blanca (i); ArgentinaFil: Oresti, Gerardo Martin. Consejo Nacional de Investigaciones Cientificas y Técnicas. Centro Científico Tecnológico Bahia Blanca. Instituto de Investigaciones Bioquímicas Bahia Blanca (i); ArgentinaFil: Dupuy, Fernando Gabriel. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones En Química Biológica de Córdoba (p); ArgentinaFil: Antollini, Silvia Susana. Consejo Nacional de Investigaciones Cientificas y Técnicas. Centro Científico Tecnológico Bahia Blanca. Instituto de Investigaciones Bioquímicas Bahia Blanca (i); ArgentinaFil: Maggio, Bruno. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones En Química Biológica de Córdoba (p); ArgentinaFil: Aveldaño, Marta Isabel. Consejo Nacional de Investigaciones Cientificas y Técnicas. Centro Científico Tecnológico Bahia Blanca. Instituto de Investigaciones Bioquímicas Bahia Blanca (i); ArgentinaFil: Fanani, Maria Laura. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Córdoba. Centro de Investigaciones En Química Biológica de Córdoba (p); Argentin

Effect of tcdR Mutation on Sporulation in the Epidemic Clostridium difficile Strain R20291

Citation: Girinathan, B. P., Monot, M., Boyle, D., McAllister, K. N., Sorg, J. A., Dupuy, B., & Govind, R. (2017). Effect of tcdR Mutation on Sporulation in the Epidemic Clostridium difficile Strain R20291. Msphere, 2(1), 14. doi:10.1128/mSphere.00383-16Clostridium difficile is an important nosocomial pathogen and the leading cause of hospital-acquired diarrhea. Antibiotic use is the primary risk factor for the development of C. difficile-associated disease because it disrupts normally protective gut flora and enables C. difficile to colonize the colon. C. difficile damages host tissue by secreting toxins and disseminates by forming spores. The toxin-encoding genes, tcdA and tcdB, are part of a pathogenicity locus, which also includes the tcdR gene that codes for TcdR, an alternate sigma factor that initiates transcription of tcdA and tcdB genes. We created a tcdR mutant in epidemic-type C. difficile strain R20291 in an attempt to identify the global role of tcdR. A site-directed mutation in tcdR affected both toxin production and sporulation in C. difficile R20291. Spores of the tcdR mutant were more heat sensitive than the wild type (WT). Nearly 3-fold more taurocholate was needed to germinate spores from the tcdR mutant than to germinate the spores prepared from the WT strain. Transmission electron microscopic analysis of the spores also revealed a weakly assembled exosporium on the tcdR mutant spores. Accordingly, comparative transcriptome analysis showed many differentially expressed sporulation genes in the tcdR mutant compared to the WT strain. These data suggest that regulatory networks of toxin production and sporulation in C. difficile strain R20291 are linked with each other. IMPORTANCE C. difficile infects thousands of hospitalized patients every year, causing significant morbidity and mortality. C. difficile spores play a pivotal role in the transmission of the pathogen in the hospital environment. During infection, the spores germinate, and the vegetative bacterial cells produce toxins that damage host tissue. Thus, sporulation and toxin production are two important traits of C. difficile. In this study, we showed that a mutation in tcdR, the toxin gene regulator, affects both toxin production and sporulation in epidemic-type C. difficile strain R20291